codex toolkit uploader (Akoya Biosciences)

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Akoya Biosciences codex toolkit uploader
Codex Toolkit Uploader, supplied by Akoya Biosciences, used in various techniques. Bioz Stars score: 99/100, based on 12635 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/codex+toolkit+uploader/PhenoCycler-Fusion+2%2E0/pmc10621466-231-6-6
Average 99 stars, based on 12635 article reviews

codex toolkit uploader - by Bioz Stars, 2026-10

99/100 stars

Images

other:

Article Title: Coordinated Cellular Neighborhoods Orchestrate Antitumoral Immunity at the Colorectal Cancer Invasive Front
Article Snippet: Raw TIFF image files were processed using the CODEX Toolkit uploader ( ).

Article Title: Coordinated cellular neighborhoods orchestrate antitumoral immunity at the colorectal cancer invasive front
Article Snippet: Raw TIFF image files were processed using the CODEX Toolkit uploader ( ).

Article Title: Computational Methods for Single-Cell Proteomics
Article Snippet: CODEX data are preprocessed using the CODEX Toolkit Uploader ( https://github.com/nolanlab/CODEX ) ( ).

Produced:

Article Title: Rhesus Macaque CODEX Multiplexed Immunohistochemistry Panel for Studying Immune Responses During Ebola Infection
Article Snippet: .. Raw TIFF images produced during image acquisition were processed using the CODEX Toolkit uploader [Version 1.5.5 ( )]. ..

Software:

Article Title: A tissue atlas of ulcerative colitis revealing evidence of sex-dependent differences in disease-driving inflammatory cell types and resistance to TNF inhibitor therapy.
Article Snippet: .. Raw TIFF image files were processed, deconvolved, and background subtracted using the CODEX Toolkit uploader and Microvolution software (Microvolution) as described before (28). .. Antibody stainings were visually assessed for each channel and cycle in each tissue region using ImageJ software (Fiji, version 2.0.0), and seven-color overlay figures for selected markers were generated.

Article Title: Immunotherapy of glioblastoma explants induces interferon-γ responses and spatial immune cell rearrangements in tumor center, but not periphery
Article Snippet: .. Raw TIFF image files were processed, deconvolved and background-subtracted using the CODEX Toolkit uploader and Microvolution software (Microvolution) as described before [ , , ]. ..

Article Title: A tissue atlas of ulcerative colitis revealing evidence of sex-dependent differences in disease-driving inflammatory cell types and resistance to TNF inhibitor therapy
Article Snippet: .. Raw TIFF image files were processed, deconvolved, and background subtracted using the CODEX Toolkit uploader and Microvolution software (Microvolution) as described before ( ). .. Antibody stainings were visually assessed for each channel and cycle in each tissue region using ImageJ software (Fiji, version 2.0.0), and seven-color overlay figures for selected markers were generated.

Selection:

Article Title: The Extra-Islet Pancreas Supports Autoimmunity in Human Type 1 Diabetes
Article Snippet: .. Drift compensation, deconvolution, z-plane selection was performed using the CODEX Toolkit uploader (github.com/nolanlab/CODEX, ). ..

Review